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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs17554633 chr19:23556852 T/C 2.97E-6 407 15.25 15.67 7.8 KM Plot
LGG rs17558929 chr5:155957913 A/G 5.13E-6 403 15.6 15.23 15.37 KM Plot
LGG rs17582082 chr9:94148066 T/G 1.3E-5 403 15.13 19.2 8 KM Plot
LGG rs175895 chr14:76307567 A/G 8.16E-8 407 15.17 17.07 0.23 KM Plot
LGG rs175960 chr5:156035967 T/G 2.6E-5 407 16.67 14.43 11.17 KM Plot
LGG rs17632785 chr5:167757566 A/C 9.14E-7 398 15.97 14.6 16.82 KM Plot
LGG rs17633197 chr8:17505412 A/G 0 407 3.77 20.27 15.03 KM Plot
LGG rs17639646 chr5:155962974 C/T 5.21E-6 406 15.57 15.17 15.37 KM Plot
LGG rs17640310 chr5:155999594 T/G 8.5E-5 404 15.33 15.3 13.5 KM Plot
LGG rs1764871 chr1:219182808 A/C 0.000178 407 14.77 19.2 15.97 KM Plot
LGG rs17670897 chr5:74097552 A/G 6.24E-5 407 15.47 11.67 8.97 KM Plot
LGG rs17678567 chr9:95054995 G/C 0.000122 406 15.17 16.73 10.5 KM Plot
LGG rs17688135 chr6:151849040 G/A 2.77E-8 404 15.35 15.7 3.77 KM Plot
LGG rs1769810 chr1:231566619 G/T 0.000199 391 15.83 15.45 13.42 KM Plot
LGG rs1772405 chr1:159010001 G/A 1.6E-5 400 9.63 17.93 14.93 KM Plot